…uture.R (set in config); use all outputs in production to aid in development of multi-crop workflow

… downscaling

…add change since start as delta_<variable> to standard output; aggregate output to monthly means

no longer load renv in .Rprofile; hard code path to renv libraries in .Renviron

Revise mixed_system_prototype.qmd for clarity and to fix incorrect labels.

Co-authored-by: Chris Black <[email protected]>

…cripts

…on density and stock and mask counties that cumulatively contribute <1% of total (consider this below detection limit given uncertainty)

…y and stock, save variable importance results; add logging and memory tracking

…rmat

…qmd` from `downscaling_report.qmd`

- Updated `040_downscale.R` to improve naming conventions and ensure training covariate matrices are saved correctly.
- Refactor `041_aggregate_to_county.R` to streamline the aggregation process and improve readability.
- Enhance `042_downscale_analysis.R` to load predictions and covariates, compute variable importance, and generate plots for partial dependence, ALE, and ICE effects using the `iml` package.
- Improved logging.

…n reports

…with different coordinates

Co-authored-by: Chris Black <[email protected]>

…dd PDP if vars are uncorrelated

…severe() to halt

…ch with a warning so failures are visible in test logs

…torization works correctly, (2) edge case where annual_init == annual_value (delta = 0), and (3) the +/- 0.1% tolerance boundary for woody_cover in incremental mode; to improves confidence in edge case handling